PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0202s0410.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 207aa    MW: 23492.3 Da    PI: 4.4623
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0202s0410.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM132.62.8e-4161141109
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                             lppGfrFhPtdeelv++yLk+k++g++++l ++i+e+d+yk+ePw+L  k  + +++ ewyfF +rd+ky++g r+nrat++gyWk+
  SapurV1A.0202s0410.1.p   6 LPPGFRFHPTDEELVNYYLKRKISGQEIDL-DIIPEIDLYKCEPWELAeKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKS 91 
                             79****************************.99**************84335556888***************************** PP

                     NAM  86 tgkdkevlskkgelvglkktLvfy 109
                             tgkd++v + +++++g+kktL  y
  SapurV1A.0202s0410.1.p  92 TGKDRRVSC-QNRAIGMKKTLDSY 114
                             *********.8999*******877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-444122IPR003441NAC domain
PROSITE profilePS5100539.8886156IPR003441NAC domain
PfamPF023659.5E-227114IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MAPVGLPPGF RFHPTDEELV NYYLKRKISG QEIDLDIIPE IDLYKCEPWE LAEKSFLPSR  60
DPEWYFFGPR DRKYPNGFRT NRATRAGYWK STGKDRRVSC QNRAIGMKKT LDSYALCRVF  120
KKNGICSEIE EQGQCTTSLS LMESSSQGVI NDYETMSPDV PIASSSCIEE EDKDDSWMQF  180
ITDDPWCSSS TAMVGGEEIS QATFID*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-41211511122Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006374257.11e-136no apical meristem family protein
SwissprotQ9FFI54e-64NAC86_ARATH; NAC domain-containing protein 86
TrEMBLU5FPE31e-136U5FPE3_POPTR; No apical meristem family protein
STRINGPOPTR_0015s05450.11e-136(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95643343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.17e-95NAC domain containing protein 57